ISSN (Online): 2321-3418
server-injected
Biological Sciences
Open Access

Genes selected after application modified logistic regression in the microarrays gene expression for breast cancer.

, , , , , , ,
DOI: 10.18535/ijsrm/v8i12.b01· Pages: 85-95· Vol. 8, No. 12, (2020)· Published: December 27, 2020
PDF
Views: 925 PDF downloads: 472

Abstract

The modified logistic regression (Morais-rodrigues et al., 2020) was used to classify breast cancer subtypes using all microarray database samples. A stabilizing term, that allows the assignment of values to αi∗ parameters, was inserted in this methodology and with that, during the derivation there is the insertion of the identity matrix (positive defined) which added to the other semi-defined part, results in a positive defined matrix, which has auto values > 0 and determinant > 0, square matrix is full rank if it is reversible (determinant > 0) , which results in a single solution. In the results it was observed that some genes were located topologically in the extremities after plotting the parameters αi∗, these parameters are related to the expression of genes with a suppressor or oncogenic profile  in breast cancer, and with genes not studied yet. Some of these genes were found in gene regulatory networks from the search of Iglesias-Martinez et al. (2016), and S-score values were associated with these genes, negative value S-score is indicative of tumor suppressing or reduced gene activity and the positive value S-score is indicative of oncogene or increased gene activity (de Souza et al., 2014). In view of the importance of these genes, this article provides a literary review of them.

Keywords

Modified logistic regressionbreast cancer subtypesmicroarraystabilizing termαi∗ parametersgenessuppressoroncogeniconcogene
Author details
Francielly Morais Rodrigues da Costa
Institute of Biological Sciences, Federal University of Minas Gerais, Brazil. Av. Antônio Carlos, 6627, Belo Horizonte, MG 31270-901,Brazil.
✉ Corresponding Author
👤 View Profile →
Diego Lucas Neres Rodrigues
Institute of Biological Sciences, Federal University of Minas Gerais, Brazil. Av. Antônio Carlos, 6627, Belo Horizonte, MG 31270-901,Brazil.
👤 View Profile →🔗 Is this you? Claim this publication
Rita Silvério-Machado
Institute of Biological Sciences, Federal University of Minas Gerais, Brazil. Av. Antônio Carlos, 6627, Belo Horizonte, MG 31270-901,Brazil.
👤 View Profile →🔗 Is this you? Claim this publication
Lucas Gabriel Rodrigues Gomes
Institute of Biological Sciences, Federal University of Minas Gerais, Brazil. Av. Antônio Carlos, 6627, Belo Horizonte, MG 31270-901,Brazil.
👤 View Profile →🔗 Is this you? Claim this publication
Rodrigo Bentes Kato
Institute of Biological Sciences, Federal University of Minas Gerais, Brazil. Av. Antônio Carlos, 6627, Belo Horizonte, MG 31270-901,Brazil.
👤 View Profile →🔗 Is this you? Claim this publication
Roselane Gonçalves dos Santos
Institute of Biological Sciences, Federal University of Minas Gerais, Brazil. Av. Antônio Carlos, 6627, Belo Horizonte, MG 31270-901,Brazil.
👤 View Profile →🔗 Is this you? Claim this publication
Vasco A. C. Azevedo
Institute of Biological Sciences, Federal University of Minas Gerais, Brazil. Av. Antônio Carlos, 6627, Belo Horizonte, MG 31270-901,Brazil.
👤 View Profile →🔗 Is this you? Claim this publication
Marcos A dos Santos
Department of Computer Science, Federal University of Minas Gerais, Brazil Av Antônio Carlos, 6627 Belo Horizonte, MG 31270-901,Brazil.
👤 View Profile →🔗 Is this you? Claim this publication